Microcourses
Microcourses
  • Видео 25
  • Просмотров 325 875
Microtutor: A new virtual light microscopy course
Microtutor: A new virtual light microscopy course
Просмотров: 121

Видео

Fluorophore Spectra
Просмотров 100Месяц назад
Anna Jost (Harvard Medical School), for Microtutor (microtutor.globalbioimaging.org)
Fluorophore Types & Labeling Methods
Просмотров 113Месяц назад
Anna Jost (Harvard Medical School), for Microtutor (microtutor.globalbioimaging.org)
Fluorophore Brightness
Просмотров 110Месяц назад
Anna Jost (Harvard Medical School), for Microtutor (microtutor.globalbioimaging.org)
Photobleaching
Просмотров 97Месяц назад
Anna Jost (Harvard Medical School), for Microtutor (microtutor.globalbioimaging.org)
Segmentation & Colocalization
Просмотров 1,8 тыс.Год назад
Lecture by Cayla Miller at the Hands-on Quantitative Confocal Microscopy Workshop at the Salk Institute in August 2022
Trackmate Introduction and Demo
Просмотров 1,2 тыс.Год назад
Lecture by Cara Schiavon at the Hands-on Quantitative Confocal Microscopy Workshop at the Salk Institute in August 2022
Detectors & Digital Imaging
Просмотров 692Год назад
Lecture by Talley Lambert (Lecturer in Systems Biology, Harvard Medical School) at the Hands-on Quantitative Confocal Microscopy Workshop at the Salk Institute in August 2022
Imaging Live Specimens
Просмотров 658Год назад
Lecture by Jennifer Waters (Director of the Nikon Imaging Center at Harvard Medical School & Chan Zuckerberg Initiative Imaging Scientist) at the Hands-on Quantitative Confocal Microscopy Workshop at the Salk Institute in August 2022
Fundamental Concepts in Quantitative Microscopy
Просмотров 640Год назад
Lecture by Jennifer Waters (Director of the Nikon Imaging Center at Harvard Medical School & Chan Zuckerberg Initiative Imaging Scientist) at the Hands-on Quantitative Confocal Microscopy Workshop at the Salk Institute in August 2022
Confocal Microscopy
Просмотров 2,2 тыс.Год назад
Lecture by Uri Manor (Assistant Research Professor & Director of the Waitt Advanced Biophotonics Core at the Salk Institute, & Chan Zuckerberg Initiative Imaging Scientist) at the Hands-on Quantitative Confocal Microscopy Workshop at the Salk Institute in August 2022
Optimizing Signal to Noise Ratio
Просмотров 910Год назад
Lecture by Rylie Walsh (Advanced Microscopy Fellow at Harvard Medical School) and Jennifer Waters (Director of the Nikon Imaging Center at Harvard Medical School & Chan Zuckerberg Initiative Imaging Scientist) at the Hands-on Quantitative Confocal Microscopy Workshop at the Salk Institute in August 2022
Spherical Aberration
Просмотров 8 тыс.Год назад
Spherical aberration distorts images generated with a light microscope. In this Microcourse, you'll learn what spherical aberration is, what is does to your images, where it comes from and how to deal with it. Thanks to my fabulous group for feedback on this video prior to release: Talley Lambert, Anna Jost, Rylie Walsh & Federico Gasparoli. References & Resources: Arimoto, R. and Murray, J.M. ...
Chromatic Shifts
Просмотров 2,5 тыс.2 года назад
This microcourse covers common sources of shifts between images of different wavelengths (e.g., when imaging multiple fluorophores in the same specimen. Some additional info: Waters, J.C. (2009) Accuracy and precision in quantitative fluorescence microscopy. J. Cell Biol. 185, 1135-1148 Ross, S.T. et al. (2014) Practical considerations of objective lenses for application in cell biology. Method...
The Confocal Principle
Просмотров 20 тыс.3 года назад
The Confocal Principle
Fluorescence Filters: Imaging Multiple Fluorophores & Dealing with Bleed-through
Просмотров 9 тыс.4 года назад
Fluorescence Filters: Imaging Multiple Fluorophores & Dealing with Bleed-through
Fluorescence Filters: Choosing a Filter Set
Просмотров 25 тыс.4 года назад
Fluorescence Filters: Choosing a Filter Set
Signal to Noise Ratio
Просмотров 20 тыс.4 года назад
Signal to Noise Ratio
Microscope alignment for optimal image quality: Koehler Illumination
Просмотров 49 тыс.5 лет назад
Microscope alignment for optimal image quality: Koehler Illumination
Best Practices for Pseudo-coloring Fluorescence Microscopy Images
Просмотров 4,2 тыс.5 лет назад
Best Practices for Pseudo-coloring Fluorescence Microscopy Images
The Point Spread Function
Просмотров 68 тыс.5 лет назад
The Point Spread Function
Numerical Aperture
Просмотров 79 тыс.5 лет назад
Numerical Aperture
Preventing Objective Lens Damage: Immersion Oil Problems
Просмотров 14 тыс.5 лет назад
Preventing Objective Lens Damage: Immersion Oil Problems
Preventing Objective Lens Damage: Blunt Force Trauma
Просмотров 11 тыс.5 лет назад
Preventing Objective Lens Damage: Blunt Force Trauma
Welcome to our channel
Просмотров 8 тыс.5 лет назад
Welcome to our channel

Комментарии

  • @lotharmayring6063
    @lotharmayring6063 Месяц назад

    that is not the prolem of FM. The problem is that the images ar so unsharp. DIC is much better

  • @PunmasterSTP
    @PunmasterSTP 2 месяца назад

    PSF? More like "Perfect videos; you're the best!"

  • @PunmasterSTP
    @PunmasterSTP 2 месяца назад

    I came here after hearing about the high-NA EUV lithography, and this was a great explanation of the core concept. Thank you so much!

  • @gugok1
    @gugok1 2 месяца назад

    Excellent explanation! Now I'm wondering how I'm going to keep my cat still under the objective, to get it into focus.... 🤔

  • @conehenge77
    @conehenge77 2 месяца назад

    Thank you so much!! That was very helpful.

  • @uzihadad1148
    @uzihadad1148 2 месяца назад

    This is one of the best lectures I have listen too about microscopy. Brilliant!

  • @henriquesouza8704
    @henriquesouza8704 4 месяца назад

    Damn... that cat is small AF!... jokes aside, great video.

  • @lotharmayring6063
    @lotharmayring6063 5 месяцев назад

    much blah-blah and no results. DIC is the better solution because fluorescence-microscopy still gives unsharp images

    • @testboga5991
      @testboga5991 5 месяцев назад

      Dude your words make no sense. How do you label a specific protein in DIC?

    • @lotharmayring6063
      @lotharmayring6063 5 месяцев назад

      @@testboga5991 why should i label proteins, only Dudes label proteins

    • @lotharmayring6063
      @lotharmayring6063 5 месяцев назад

      ok, some people at universties may label proteins but not me. You can also label proteins with radioactiv substances or normal dies specific. Fluorescence is not nessesary

  • @hosseinghasemi1659
    @hosseinghasemi1659 7 месяцев назад

    awesome

  • @tinglianyuan3098
    @tinglianyuan3098 7 месяцев назад

    Could not find a better instructional video on spherical aberration than this! Reach Brilliant when deciphering the aberration at the imaging plane.

  • @tinglianyuan3098
    @tinglianyuan3098 7 месяцев назад

    Lovely to see the pink heart picture flashing out when doing the axial scanning (around 3'30") and she says "the PSF is beautiful!".

  • @nickpaige8178
    @nickpaige8178 7 месяцев назад

    thanks for posting!

  • @damiancavazos7043
    @damiancavazos7043 7 месяцев назад

    Thank you for your videos

  • @richardred4396
    @richardred4396 7 месяцев назад

    you were able to make me understand these concepts with a 12 minute video

  • @RadhikaSharma-oi4ne
    @RadhikaSharma-oi4ne 8 месяцев назад

    Wow. I am a phd student learning fluorescence microscopy at the moment for some of my experiments. This totally blew my mind away and cleared most of my misconcepts. Thank you!

  • @alexandrevaliquette3883
    @alexandrevaliquette3883 8 месяцев назад

    So, in a nutshel: Koehler is a fancy contraceptive method invented in Harvard 4 years ago. You should not use it until you are on your second cycle. Thank you very much for sharing such precious information for free.

    • @Microcourses
      @Microcourses 8 месяцев назад

      It’s not that fancy.

    • @alexandrevaliquette3883
      @alexandrevaliquette3883 8 месяцев назад

      @@Microcourses Lol! I'm sorry, I did not want you to waste your time with an answer to my ridiculous comment! I've put a thumbs up and just wanna give a little boost on YT algo on that topic with that silly comment. Have a great day, love from Montréal.

    • @Microcourses
      @Microcourses 8 месяцев назад

      I appreciated the laugh!

  • @dummag4126
    @dummag4126 9 месяцев назад

    increase the subject illumination!!!

    • @Microcourses
      @Microcourses 9 месяцев назад

      Sure, with the trade-off of increased photobleaching, and phototoxicity in live samples.

  • @RossOCarroll3301
    @RossOCarroll3301 9 месяцев назад

    yeah this was actually incredible.

  • @dsasmalmnp
    @dsasmalmnp 9 месяцев назад

    Fantastic.. I just taught a PG class on PSF.. This helped me a lot to prepare materials.

  • @Roman-vy6po
    @Roman-vy6po 9 месяцев назад

    Geting prepared for an interview with this course (I was far away from the miscroscopy before). Well, that's a masterpiece. I absolutely love it. Please don't stop!

    • @Microcourses
      @Microcourses 9 месяцев назад

      Good luck with your interview!

  • @kochipj
    @kochipj 10 месяцев назад

    Pretty neat explanation! What is missing for a nerd like me are some remarks on the differences between coherent and incoherent imaging and Abbe theory of image formation. What was really enlightening to me was when I read the treatment of Goodman on Fourier Optics that shows that in the coherent case, Abbe theory based on the collection of diffraction orders from the object interfering in the image plane and the convolution approach using the Amplitude PSF are equivalent, because the amplitude transfer function involves a second fourier transform of the Airy Disc PSF that gives a circ while the incoherent case (e.g. from a self-luminous object) yields the autocorrelation of the aperture function because of the square operation in the spatial frequency domain (convolution theorem).

  • @perspectivex
    @perspectivex Год назад

    I agree, with everyone else--nice and concise explanation. One thing I don't understand though, that fact of it being called "Koehler illumination" seems to imply there might be other types of illumination set ups that don't follow this procedure. Is that true? Or is Koehler illumination basically the only kind of lens set up there is? And/or are there cases where you just don't care about condenser z-alignment that much?

    • @Microcourses
      @Microcourses 11 месяцев назад

      Thank you for the kind comments. There is another type of alignment, but it is rarely used anymore: en.wikipedia.org/wiki/Critical_illumination. You can probably get away with ignoring the condenser for low resolution brightfield. But if you always need it for phase & DIC, and to obtain decent resolution.

  • @christianforrer2332
    @christianforrer2332 Год назад

    I kindly suggest you to do a video about the entrance and exit pupil, and the aperture and field stop as well, of an optical system. Might be presented in a more linear and clearer way than how I was taught those concepts in the first place.

    • @Microcourses
      @Microcourses Год назад

      Check out my video on microscope alignment. It may be what you’re looking for!

  • @govindanunnipadmakumar1959
    @govindanunnipadmakumar1959 Год назад

    This is so useful. Exactly what I was looking for. You explained it so well. The productive 20 minutes of my day :).

  • @jrahm111
    @jrahm111 Год назад

    Very clear explanation. Thank you for putting in so much effort!!

  • @akatsuki6371
    @akatsuki6371 Год назад

    Thanks for uploading! What programs do you recommend for image analysis?

    • @Microcourses
      @Microcourses Год назад

      ImageJ/FIJI is a great place to start. You can get support for image analysis at the forum image.sc.

  • @CharlesGervasi
    @CharlesGervasi Год назад

    This was so helpful. My background is in electrical, so I had to watch it at 75% speed and take notes. I now understnad the basics of microscope optics.

  • @WastedElephant
    @WastedElephant Год назад

    On my regular old compound microscope, I would love to only move the high power lenses away from the slide when focusing. The problem is that I am unable to see the tiny distance from the the slide to the lens. This means I can't safely bring the lens to the slide in order to move it only away while focusing. 🫤

  • @huguesbitault7242
    @huguesbitault7242 Год назад

    Thanks a lot for the video. The explanation is crystal clear and easy to follow! Thanks for sharing.

  • @agnieszkadyrda9918
    @agnieszkadyrda9918 Год назад

    Thank you so much for this explanation! It is much much clearer now. I am so happy that I found this video.

  • @DP-qb1zw
    @DP-qb1zw Год назад

    I covered the bottom of my stage petri dish holder with tape so the objective would hit a softer surface if accidentally touching it, plus, it is not fixed to the stage, so it can lift up, too, if touched by the objectives. But, best practice is lowering objectives before changing them.

  • @Bretaxy
    @Bretaxy Год назад

    Very useful information.

  • @mp3lwgm
    @mp3lwgm Год назад

    Your equation for d makes it larger than the Abbe diffraction equation. According to Abbe the correct number in the numerator os 0.5 and not 0.61.

    • @Microcourses
      @Microcourses Год назад

      The equation I’ve given is not mine. It’s the Rayleigh equation, which uses a different criterion than Abbe for defining resolution. Rayleigh criterion is the most commonly used and accepted.

  • @goombaboomba593
    @goombaboomba593 Год назад

    Shiiiiiii tally with the clutch

  • @yaxinchen3507
    @yaxinchen3507 Год назад

    I was struggling to understand the whole concept for the last 3 days, until watching this 20 minute-video!

  • @MelHugs
    @MelHugs Год назад

    This is a really clear and crisp explanation of why image quality can often be non-optimal in one sample, and completely non-standardised from sample to sample. Thank you! The partial solutions described are all good when considering the standard microscope slide system we have to work with. I would be very interested in talking to you about a way in which we can consider improving the sample position, during preparation, on the microscope slide rather than the partial solutions using the microscope.

  • @allenshaw9996
    @allenshaw9996 Год назад

    Are there any downsides to using higher numerical apertures?

  • @allen8376
    @allen8376 Год назад

    If the pinhole at the image plane is what rejects the out-of-focus fluorescence, then why does focused illumination matter? (I.e., why laser instead of widefield?) Is it to reduce interference from neighboring fluorescence?

    • @roadrunner6653
      @roadrunner6653 8 месяцев назад

      You want to put your light in the place where it can be used. If you illuminated everything, very little light would return and you'd have to sit on each voxel for a long time.

    • @allen8376
      @allen8376 8 месяцев назад

      @@roadrunner6653 so it’s for the intensity of light at the point of interest?

    • @roadrunner6653
      @roadrunner6653 8 месяцев назад

      Yes, all the other light wouldn't be useful (not collected through the aperture) and you'd like to maximize the signal from the point of interest. That part of your sample might only return 1 in a million photons (low reflectivity). @@allen8376

  • @amribrahim7850
    @amribrahim7850 Год назад

    Thanks for your informative video. I'd like to ask about the correlation cofficients used in co-localization between Magenta and Green, could you please elaborate how do you calculate that correlation between the two colors?

    • @Microcourses
      @Microcourses Год назад

      This is an excellent question for the image analysis experts at image.sc discussion forum!

  • @MRchalkie666
    @MRchalkie666 Год назад

    Nice instructional video! Perhaps we can say that spherical shaped lenses are easier to manufacture and polish, and so they are used, but they are the wrong shape to focus to a point. This is why it's called spherical aberration. Large aspherical lenses are possible to make and are the right shape, but the tiny ones needed on objective lenses are super hard to make and so are not used, and so extra lenses in the objective are used to cancel out the spherical aberration from the spherical top lens.

    • @Microcourses
      @Microcourses Год назад

      Thank you for your comment and clear explanation!

  • @manishsuthar4002
    @manishsuthar4002 Год назад

    I've never come across lateral and axial in these waves... Thanks...

  • @vijaybenz9741
    @vijaybenz9741 Год назад

    Jenifer Walters attorney at law

  • @edward_grabczewski
    @edward_grabczewski Год назад

    Video tutorials don't come any clearer that this. Great job! Why can't you just place the light source at the focal plane of the Field lens to create a collimated beam of even light that could be passed to the Condenser lens?

    • @Microcourses
      @Microcourses Год назад

      Field lens? Do you mean field diaphragm?

    • @edward_grabczewski
      @edward_grabczewski Год назад

      @@Microcourses Sorry, using your terminology then I should have said "Collector" lens. Tell me if I'm wrong but for a biconvex lens then if you put a light source at the focal point of the lens then doesn't it produce a collimated beam of light? If so then why not put the light source at the focal point of the Collector lens and create a collimated beam of light that shines straight into the Condenser lens. Wouldn't this provide the even illumination that Kohler illumination is trying to achieve?

    • @Microcourses
      @Microcourses Год назад

      @@edward_grabczewski Got it. If you put the light source in the focal plane of the collector lens, the condenser would focus the image of the light source onto the specimen. In principle you could place the light source at the focal plane of the condenser. However, using two lenses in serial allows for optimal alignment for different objective lenses, and minimizes the amount of heat (from the light source) that makes it to the sample. The collector lens can also be used to magnify the image of the light source, allowing use of higher NA condenser lenses (I didn't get into the benefit of using a high NA condenser in this video).

    • @edward_grabczewski
      @edward_grabczewski Год назад

      @@Microcourses Good point! The Condenser lens would focus the collimated beam back into a point! And the other good point about heat was no doubt very important up until recently when LEDs became popular. Thanks for putting me right 🙂

  • @jacquescousteau461
    @jacquescousteau461 Год назад

    Thank you very much. This video really helped me going through the optical microscopy.

  • @davidtaylor3544
    @davidtaylor3544 Год назад

    Extremely thorough, yet never confusing. Much appreciated!

  • @diatomsaus
    @diatomsaus Год назад

    This is an exceptional video, but the diatom at 1:00 is certainly not Pleurosigma angulatum. Not trying to nit-pick or act smug, this is one of the best PSF videos I have watched so far.

    • @Microcourses
      @Microcourses Год назад

      Thank you! My records may be incorrect. What species is it?

    • @diatomsaus
      @diatomsaus Год назад

      @@Microcourses I think it should be Frustulia rhomboides.

  • @LIght-lj5fx
    @LIght-lj5fx Год назад

    nice video! a quick question: in principle, you could use a single lens (rather than two lenses, colletor + condenser) to collimate the light from the source. If there is indeed a reason to do that? I guess would be using the image of the field diaphragm as a reference in the image captured by the retina(?)

    • @Microcourses
      @Microcourses Год назад

      A single lens could work but a series of lenses gives greater flexibility, and it’s good to keep the heat of the light source far away from the sample

  • @zedius24
    @zedius24 Год назад

    Best explantion out there. Congratulations.

  • @dcamron46
    @dcamron46 2 года назад

    It’s also a property optical fiber, how does the definition vary in this as compared to lens? Why doesn’t the diameter matter

  • @laraachaji7584
    @laraachaji7584 2 года назад

    Thank you ♡